sverger / SurfCut
Fiji macro for cutting confocal stacks at various depths relative to surface signal
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SurfCut
- python tools for BigDataViewer☆21Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated 2 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆18Updated this week
- ☆19Updated 3 weeks ago
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- ☆17Updated 2 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- ☆12Updated 3 years ago
- PSFj - Know your microscope fluorescence☆19Updated 4 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆21Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated last month
- ☆10Updated last year
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆14Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆21Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 2 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆15Updated last month
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆13Updated last year
- ImageJ convenience layer for N5☆15Updated last week
- Process images using SimpleITK in napari☆19Updated 3 weeks ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- ☆13Updated 4 years ago
- my first baby steps with Napari☆10Updated 4 years ago
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago