sverger / SurfCutLinks
Fiji macro for cutting confocal stacks at various depths relative to surface signal
☆10Updated 4 years ago
Alternatives and similar repositories for SurfCut
Users that are interested in SurfCut are comparing it to the libraries listed below
Sorting:
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- python tools for BigDataViewer☆22Updated 8 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- ☆12Updated 4 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 5 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated last week
- A python library for advanced lattice light-sheet image analysis☆21Updated 5 years ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 2 months ago
- ☆13Updated 5 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 5 months ago
- Process images using SimpleITK in napari☆22Updated 4 months ago
- my first baby steps with Napari☆10Updated 5 years ago
- ☆13Updated 5 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- ☆19Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- A self-supervised denoising algorithm.☆27Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- Create 3D/4D animations using a natural language-based syntax☆60Updated 3 months ago
- ☆13Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated last week