ome-zarr-models / ome-zarr-models-pyLinks
A minimal Python package for reading, writing and validating OME-Zarr (meta)data
☆36Updated 2 weeks ago
Alternatives and similar repositories for ome-zarr-models-py
Users that are interested in ome-zarr-models-py are comparing it to the libraries listed below
Sorting:
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆32Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week
- native Python dataclasses for the OME data model☆64Updated last week
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- Command-line client for Fractal☆47Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 4 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- Create web-based OME-Zarr galleries☆22Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- Main tasks for the Fractal analytics platform☆22Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- A template repo used to make new napari plugins☆29Updated this week
- ☆18Updated 2 weeks ago
- Browse your OMERO database from within napari.☆39Updated this week
- ☆41Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- High quality visualization for volumetric image data☆53Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆145Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆33Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆109Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆44Updated this week
- GPU-accelerated Image Processing library for Python☆52Updated last week
- ☆36Updated last year