afermg / cp_measureLinks
Morphological features from images and masks made easy.
☆37Updated last week
Alternatives and similar repositories for cp_measure
Users that are interested in cp_measure are comparing it to the libraries listed below
Sorting:
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- ☆85Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆12Updated this week
- Find profile pairs and compute metrics between them.☆20Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆152Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆106Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last week
- Interactive visualization of spatial omics data☆70Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- Command-line client for Fractal☆47Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- QuPath extension for Cellsparse☆19Updated 5 months ago
- ☆36Updated last year
- ☆25Updated 2 years ago
- StarDist plugin for napari☆39Updated last year
- ☆51Updated 5 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- ☆34Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago