Scientific Dataset Quality Control and Data Exploration Tool
☆21Feb 26, 2026Updated last week
Alternatives and similar repositories for pixel-patrol
Users that are interested in pixel-patrol are comparing it to the libraries listed below
Sorting:
- ☆12Mar 18, 2024Updated last year
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- ☆33Oct 10, 2025Updated 4 months ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 7 months ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆19Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- ☆15Mar 2, 2026Updated last week
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 8 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆18Feb 25, 2026Updated last week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 3 weeks ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆37Feb 1, 2026Updated last month
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- GPU-accelerated Image Processing library for Python☆53Updated this week
- 3D segmentation for cells and organoids of 3D multichannel images☆30Jun 24, 2025Updated 8 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- Cell tracking and segmentation software☆174Mar 1, 2026Updated last week
- ☆30Jan 19, 2026Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- ☆25May 16, 2023Updated 2 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- 3D shape analysis using deep learning☆29Oct 8, 2025Updated 5 months ago
- Friendly base POM for all SciJava-based software☆28Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆44Feb 23, 2026Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated 11 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 3 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated this week
- A napari plugin for zarr backed OME-NGFF images☆45Mar 2, 2026Updated last week
- navigate - open source light-sheet microscope controls☆38Updated this week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32May 3, 2023Updated 2 years ago
- ☆37Dec 13, 2023Updated 2 years ago