quantacell / 3DcellScopeLinks
3D segmentation for cells and organoids of 3D multichannel images
☆18Updated last month
Alternatives and similar repositories for 3DcellScope
Users that are interested in 3DcellScope are comparing it to the libraries listed below
Sorting:
- ☆33Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Piecewise alignment for layers of mosaics☆28Updated 3 weeks ago
- QuPath extension for Cellsparse☆19Updated 3 months ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Interactive visualization of spatial omics data☆64Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- The official QuPath extension for InstanSeg☆24Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- A pipeline to transform images into valuable analysis items☆13Updated last month
- multimodal whole slide image registration in a graph structure☆90Updated last year
- ☆20Updated 3 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last week
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Accurate and efficient spot detection for microscopy data☆92Updated this week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- comseg☆24Updated 6 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- Threshold independent detection and localization of diffraction-limited spots.☆35Updated 2 years ago
- Framework for image and flow cytometry analysis☆28Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated last week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆21Updated last month
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆28Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago