3D segmentation for cells and organoids of 3D multichannel images
☆34Jun 23, 2026Updated 2 months ago
Alternatives and similar repositories for 3DcellScope
Users that are interested in 3DcellScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- Cell tracker designed for tracking intestinal organoids☆44Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 2 weeks ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 9 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 31, 2026Updated 2 weeks ago
- Interactive visualization of spatial omics data☆90Sep 8, 2026Updated last week
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ☆27Jun 17, 2025Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆101Updated this week
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last week
- ☆243Jul 30, 2026Updated last month
- Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.☆15Dec 22, 2025Updated 8 months ago
- computer vision models for single-cell phenotyping☆104Updated this week
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆36Sep 11, 2026Updated last week
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆24Mar 22, 2023Updated 3 years ago
- Train and fine-tune diffusion models. Perform image-to-image class transfer experiments.☆15Feb 13, 2025Updated last year
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆24May 16, 2025Updated last year
- Imaris file format reader☆15Sep 1, 2026Updated 2 weeks ago
- Analysis of Single Cell Expression data in Julia☆25Updated this week
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18May 14, 2025Updated last year
- ☆27Jan 10, 2025Updated last year
- ggplot2-python, full original taste of R ggplot2☆20Jul 16, 2026Updated 2 months ago
- ☆38Jan 22, 2026Updated 7 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- ☆13Sep 30, 2024Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated last year