Graph-based framework to manipulate and analyze cell lineages from cell tracking data
☆24Sep 30, 2026Updated last week
Alternatives and similar repositories for pycellin
Users that are interested in pycellin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- ☆27Sep 11, 2026Updated 3 weeks ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆26Jul 7, 2026Updated 3 months ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 months ago
- Transformer-based cell tracking for live-cell microscopy☆155Sep 11, 2026Updated 3 weeks ago
- GPU-accelerated Image Processing library for Python☆65Oct 1, 2026Updated last week
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 months ago
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated 2 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Browse, share, and publish OME-Zarr data☆30Updated this week
- Scientific image analysis resources and software tools.☆49Oct 3, 2026Updated last week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 7 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- A web-based, time-series visualizer for tracked segmented data.☆17Sep 29, 2026Updated last week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- Multi-Object Tracking with Integer Linear Equations☆42Jul 21, 2026Updated 2 months ago
- Cell tracking and segmentation software☆209Aug 13, 2026Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆22Aug 10, 2023Updated 3 years ago
- Interprocess environment manager 🧊☆17Sep 23, 2026Updated 2 weeks ago
- Fractal backend☆21Oct 1, 2026Updated last week
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- A recast of cell segmentation models built on the Burn deep learning framework.☆24Oct 2, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deep-learning library for image restoration.☆154Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆79Aug 25, 2026Updated last month
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 11 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆49Aug 24, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated last week
- Light microscopy simulation in python.☆55Updated this week