zarr-developers / zarr-javaLinks
Java implementation of the Zarr Specification
☆16Updated this week
Alternatives and similar repositories for zarr-java
Users that are interested in zarr-java are comparing it to the libraries listed below
Sorting:
- ☆111Updated 3 weeks ago
- This repository provides an interface in MATLAB to read and write Zarr files. Zarr is a file format for scientific data (like HDF5 and ne…☆17Updated last week
- Shell scripts for scientific projects written in Java☆16Updated last month
- ☆18Updated last month
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated last month
- ☆20Updated last week
- ImgLib2-based viewer for registered SPIM stacks and more☆41Updated last week
- Browse your OMERO database from within napari.☆40Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- Running compute-intense parts of BigStitcher distributed☆28Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆56Updated this week
- Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…☆411Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last week
- The Java library to run Deep Learning models☆32Updated 2 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆220Updated this week
- native Python dataclasses for the OME data model☆65Updated last week
- A Java implementation of the API offered by the Python zarr package☆35Updated 7 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- ☆41Updated 3 weeks ago
- The ImageJ wiki☆28Updated this week
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- A distributed application framework for large-scale data management and AI model serving☆22Updated this week
- Friendly base POM for all SciJava-based software☆28Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- ☆14Updated 2 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆46Updated last month
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago