Alternatives and similar repositories for Defragmentation_TrainingSchool_EOSC-Life_2022

Users that are interested in Defragmentation_TrainingSchool_EOSC-Life_2022 are comparing it to the libraries listed below

• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆18Updated 2 weeks ago
• BiAPoL / Quantitative_Bio_Image_Analysis_with_Python_2022
  This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
  ☆16Updated 3 years ago
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated last year
• dlegland / mathematical_morphology_with_MorphoLibJ
  A collection of demonstration materials for MorphoLibJ.
  ☆12Updated 2 years ago
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• UU-cellbiology / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 3 weeks ago
• guiwitz / napari-serialcellpose
  ☆15Updated last month
• BIOP / ijp-kheops
  ☆20Updated 2 months ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆30Updated 7 months ago
• maweigert / spotipy
  ☆12Updated last year
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆28Updated last year
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 3 weeks ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆55Updated 7 months ago
• tpecot / DeepLearningForBiologists_FromClassificationToSegmentation
  ☆13Updated 9 months ago
• GuignardLab / tapenade
  ☆13Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆99Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• ida-mdc / pixel-patrol
  Scientific Dataset Quality Control and Data Exploration Tool
  ☆20Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆113Updated 3 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆110Updated last week
• HenriquesLab / PhotoFiTT
  Computational workflows to assess phototoxicity in live-cell microscopy experiments
  ☆11Updated 3 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 6 months ago
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆17Updated last month
• AnniekStok / napari-segmentation-toolbox
  A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
  ☆11Updated 2 weeks ago
• bauerdavid / napari-nD-annotator
  ☆37Updated 3 weeks ago
• peng-lab / leonardo_toolset
  ☆16Updated 3 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week
• LaboratoryOpticsBiosciences / FLUTE
  Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
  ☆28Updated last month