In-silico doublet annotation for single cell RNA sequencing data
☆11Jan 7, 2026Updated 7 months ago
Alternatives and similar repositories for scds
Users that are interested in scds are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- ChromSCape☆14Jul 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- ☆13Sep 11, 2025Updated 11 months ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 7 months ago
- A shiny app for metacell analysis☆11Jun 1, 2026Updated 2 months ago
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 7 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆41Jul 10, 2023Updated 3 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to visualize scRNA sequencing data.☆21Feb 4, 2022Updated 4 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- ☆15Feb 12, 2026Updated 6 months ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆18Oct 22, 2024Updated last year
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- SUSHI: Supporting User for SHell script Integration☆29Updated this week
- ☆17Jul 13, 2024Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- ☆33Mar 4, 2024Updated 2 years ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆26Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆85Aug 10, 2026Updated 2 weeks ago
- Reproducing the paper "The continuous Bernoulli: fixing a pervasive error in variational autoencoders" for the Reproducibility Challenge …☆12Jul 25, 2024Updated 2 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data☆13Apr 22, 2021Updated 5 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago