mdsufz / MuDoGeRLinks
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
☆86Updated 11 months ago
Alternatives and similar repositories for MuDoGeR
Users that are interested in MuDoGeR are comparing it to the libraries listed below
Sorting:
- ☆52Updated 2 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- ARG normalization by mapping to the ARO ontology.☆58Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- ☆72Updated this week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Prediction of prophages from bacterial genomes☆78Updated last month
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- ☆47Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- Reorients assembled microbial sequences☆121Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆47Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago