mdsufz / MuDoGeR
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
☆88Updated 5 months ago
Alternatives and similar repositories for MuDoGeR:
Users that are interested in MuDoGeR are comparing it to the libraries listed below
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆43Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- Local version of the virus identification and analysis web server (tool set)☆41Updated this week
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆63Updated 5 months ago
- Reorients assembled microbial sequences☆106Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆47Updated 9 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- ☆27Updated last year
- MetaCompare☆17Updated 10 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- ☆49Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆60Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- ☆57Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆59Updated 2 years ago
- IS mapping software☆53Updated 3 years ago
- A toolbox for comparative genomics.☆99Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆69Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago