mdsufz / MuDoGeR
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
☆88Updated 8 months ago
Alternatives and similar repositories for MuDoGeR:
Users that are interested in MuDoGeR are comparing it to the libraries listed below
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- ☆50Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- ☆48Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆64Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 10 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 4 years ago
- MetaCompare☆17Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 8 months ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Prediction of prophages from bacterial genomes☆78Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 2 weeks ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Reorients assembled microbial sequences☆116Updated last month
- ☆45Updated 2 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆69Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆78Updated this week
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Supporting code for uncultivated gut virus manuscript☆71Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Scripts and libraries for Environmental Genomics☆37Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆51Updated 2 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆35Updated last month