mdsufz / MuDoGeRLinks
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
☆89Updated last year
Alternatives and similar repositories for MuDoGeR
Users that are interested in MuDoGeR are comparing it to the libraries listed below
Sorting:
- ☆56Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆84Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- ☆53Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 3 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 8 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆83Updated 8 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆24Updated 7 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆78Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- ☆64Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- ☆50Updated 3 weeks ago