Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
☆16Jul 1, 2024Updated last year
Alternatives and similar repositories for guppy_on_slurm
Users that are interested in guppy_on_slurm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- ☆16Jun 2, 2024Updated last year
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- ☆21Apr 2, 2025Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- ☆38Jan 12, 2026Updated 3 months ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Nov 17, 2025Updated 5 months ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated 3 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- ☆25Jun 25, 2024Updated last year
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Feb 6, 2024Updated 2 years ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆128Jan 8, 2026Updated 4 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Unsupervised Machine Learning project for evaluating 2017-18 NBA player similarity☆13Sep 25, 2019Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated last month
- ☆16Aug 14, 2024Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Jan 16, 2024Updated 2 years ago
- Scripts for analyzing PacBio AAV sequences☆15May 3, 2024Updated 2 years ago
- ☆87Apr 28, 2026Updated last week
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆89Dec 27, 2024Updated last year
- random collection of scripts used to process sequences☆10Dec 16, 2025Updated 4 months ago
- Variant call adjudication☆17Jun 13, 2024Updated last year