colindaven / guppy_on_slurmLinks
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
☆16Updated last year
Alternatives and similar repositories for guppy_on_slurm
Users that are interested in guppy_on_slurm are comparing it to the libraries listed below
Sorting:
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Read contamination removal☆25Updated last year
- Find Unique genomic Regions☆32Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated 2 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Variant call verification☆16Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- De novo VIral Genome Annotator☆23Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆16Updated last month
- Nanopore Real-Time Analysis Tool☆16Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- ☆18Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- map Illumina metagenomes to genomes!☆38Updated 2 weeks ago