yekaizhou / duetLinks
SNP-Assisted SV Calling and Phasing Using ONT
☆25Updated 2 years ago
Alternatives and similar repositories for duet
Users that are interested in duet are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Updated 2 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆48Updated 2 months ago
- Variant annotation and merging pipeline☆42Updated 6 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 5 months ago
- ☆51Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated 3 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆53Updated 11 months ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ULTRA Locates Tandemly Repetitive Areas☆41Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year