SNP-Assisted SV Calling and Phasing Using ONT
☆25Jul 9, 2023Updated 2 years ago
Alternatives and similar repositories for duet
Users that are interested in duet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- ☆15Apr 2, 2024Updated 2 years ago
- ☆128Apr 18, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 3 weeks ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated 2 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆74Apr 12, 2026Updated 3 weeks ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆42Apr 16, 2026Updated 2 weeks ago
- ☆20Nov 17, 2025Updated 5 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆358Apr 27, 2026Updated last week
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆30Aug 1, 2023Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- ☆84Mar 3, 2025Updated last year
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated last year
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago