SNP-Assisted SV Calling and Phasing Using ONT
☆25Jul 9, 2023Updated 3 years ago
Alternatives and similar repositories for duet
Users that are interested in duet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- A long-read somatic phasing software for tumor-only sequencing☆15Dec 18, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Apr 2, 2024Updated 2 years ago
- ☆129Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Jul 17, 2026Updated last week
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- ☆17Jul 1, 2026Updated 3 weeks ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- ☆20Nov 17, 2025Updated 8 months ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92Jul 1, 2026Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- ☆30Aug 1, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆107Sep 1, 2022Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 4 months ago
- ☆85Mar 3, 2025Updated last year
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/…☆16Mar 31, 2025Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Visualization toolkit for differential splicing events☆21Apr 19, 2026Updated 3 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆116Apr 9, 2025Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago