WDL workflows for variant calling and assembly using ONT
☆39May 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for napu_wf
Users that are interested in napu_wf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15May 13, 2026Updated 2 weeks ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆185May 4, 2026Updated 3 weeks ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Short Tandem Repeat disease loci resource☆29May 21, 2026Updated last week
- Variant Interpretation Pipeline☆49May 22, 2026Updated last week
- Long read production pipelines☆151May 22, 2026Updated last week
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆20Nov 17, 2025Updated 6 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 months ago
- ☆22Aug 8, 2022Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆76Apr 12, 2026Updated last month
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆17Dec 21, 2025Updated 5 months ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18May 19, 2026Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 8 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Minotour API, web and client code☆30Mar 28, 2026Updated 2 months ago
- ☆12Apr 18, 2022Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- ☆22Jan 3, 2025Updated last year
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- WDL’s and Dockerfiles for assembly QC process☆72Apr 28, 2026Updated last month
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Medical Genetics Sequence Analysis Pipelines☆89May 21, 2026Updated last week
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 6 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 3 months ago
- ☆14Mar 22, 2018Updated 8 years ago