WDL workflows for variant calling and assembly using ONT
☆40Sep 26, 2026Updated this week
Alternatives and similar repositories for napu_wf
Users that are interested in napu_wf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Workflow to annotate SNVs, indels, and structural variants☆17May 13, 2025Updated last year
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆16Jun 29, 2026Updated 2 months ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Nanopore sequencing-based episignature detection☆18Jun 10, 2026Updated 3 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 3 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Updated this week
- Variant Interpretation Pipeline☆51Updated this week
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆45Aug 26, 2026Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 6 months ago
- Short Tandem Repeat disease loci resource☆29Updated this week
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- ☆20Nov 17, 2025Updated 10 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 7 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆23Aug 8, 2022Updated 4 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 3 months ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 5 months ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- WDL’s and Dockerfiles for assembly QC process☆73Updated this week
- ☆22Sep 1, 2026Updated 3 weeks ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆35Feb 5, 2026Updated 7 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago
- Medical Genetics Sequence Analysis Pipelines☆93Updated this week
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated 2 years ago
- Long read production pipelines☆152Updated this week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 7 months ago