Alternatives and similar repositories for pedl

Users that are interested in pedl are comparing it to the libraries listed below

• joanaapa / Distillation-DNABERT-Promoter
  Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
  ☆24Updated 3 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• technion-cs-nlp / BiologicalTokenizers
  Effect of tokenization on transformers for biological sequence
  ☆20Updated last year
• tudorgroza / fast_hpo_cr
  ☆14Updated 5 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• ncbi / GNorm2
  ☆25Updated last year
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated 3 weeks ago
• ncbi-nlp / pubtator-gpt
  ☆31Updated last year
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated last year
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆12Updated 2 years ago
• QData / FastSK
  Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…
  ☆21Updated 2 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆29Updated 2 years ago
• p-koo / evoaug
  Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
  ☆24Updated 5 months ago
• science-machine / biomlbench
  Benchmark agents on BioML tasks
  ☆55Updated last month
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆35Updated 7 months ago
• HLTCHKUST / snp2vec
  Code and dataset for SNP2Vec paper
  ☆21Updated 2 years ago
• lucidrains / enformer-tensorflow-sonnet-training-script
  The full training script for Enformer - Tensorflow Sonnet
  ☆18Updated 3 years ago
• wangshenguiuc / OnClass
  Single cell typing based on cell ontology
  ☆52Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• jacobvsdanniel / pubmedkb_core
  ☆14Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆18Updated 3 years ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆95Updated 4 months ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated 3 weeks ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago
• Center-for-Health-Data-Science / bulkDGD
  Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.
  ☆13Updated last year
• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆13Updated 2 weeks ago