Alternatives and similar repositories for pedl

Users that are interested in pedl are comparing it to the libraries listed below

• ncbi-nlp / pubtator-gpt
  ☆25Updated last year
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated 11 months ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆13Updated 5 months ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• ncbi / AIONER
  AIONER
  ☆55Updated 9 months ago
• lucidrains / enformer-tensorflow-sonnet-training-script
  The full training script for Enformer - Tensorflow Sonnet
  ☆18Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆54Updated 2 years ago
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• ncbi / BioREx
  ☆34Updated 3 months ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 5 months ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• technion-cs-nlp / BiologicalTokenizers
  Effect of tokenization on transformers for biological sequence
  ☆16Updated last year
• ncbi / bert_gt
  ☆32Updated last year
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆55Updated this week
• OntoGene / OGER
  ☆24Updated 4 years ago
• ncbi / GNorm2
  ☆20Updated last year
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆20Updated 2 months ago
• monarch-initiative / talisman
  LLM-based gene function enrichment tool
  ☆11Updated 2 months ago
• Aitslab / EasyNER
  a customzable pipeline for information extraction
  ☆17Updated this week
• BioMistral / BioMistral
  ☆33Updated 10 months ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆30Updated last month
• starstorms9 / geco
  GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…
  ☆9Updated last year
• ml-jku / DNA-xLSTM
  ☆13Updated 6 months ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated 7 months ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆82Updated 2 weeks ago