resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
☆12Jan 30, 2023Updated 3 years ago
Alternatives and similar repositories for resVAE
Users that are interested in resVAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- ☆11May 3, 2022Updated 3 years ago
- ☆11Feb 15, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆26Apr 11, 2023Updated 2 years ago
- The first GANs-based omics-to-omics translation framework☆15Sep 5, 2023Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆191Jan 30, 2026Updated 2 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- Search the biomedical literature for protein interactions and protein associations☆11Nov 24, 2023Updated 2 years ago
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆20Nov 10, 2025Updated 4 months ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Nov 14, 2022Updated 3 years ago
- Disease pathways in the human interactome☆22Mar 20, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated 2 weeks ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 8 months ago
- Segmentation-free Analysis of In Situ Capture data☆14Jan 5, 2026Updated 2 months ago
- Data and analysis for the Splatter paper☆30Dec 4, 2017Updated 8 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- ☆11Mar 24, 2026Updated last week
- 研一深度学习课程作业 Bi-LSTM + Attention （nice code）☆10Jan 13, 2020Updated 6 years ago
- ☆11Oct 21, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Jun 13, 2025Updated 9 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- Biwhitened PCA☆14Mar 18, 2026Updated last week
- R package for distance- and density-based outlier detection☆12May 28, 2019Updated 6 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Multi-task deep learning framework for multi-omics data analysis☆50May 5, 2022Updated 3 years ago
- Cross-correlation coefficients in Python☆12Sep 22, 2017Updated 8 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 4 months ago
- ☆13Jun 6, 2024Updated last year
- Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.☆13Feb 19, 2025Updated last year
- ☆11Dec 8, 2021Updated 4 years ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 11 months ago