gambalab / gficfLinks
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
☆18Updated last year
Alternatives and similar repositories for gficf
Users that are interested in gficf are comparing it to the libraries listed below
Sorting:
- ☆32Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆34Updated last year
- ☆29Updated 2 years ago
- ☆49Updated 10 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- ☆20Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 6 months ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Landscape Single Cell Entropy☆21Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆18Updated last month
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated 2 years ago
- ☆13Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago