gambalab / gficfLinks
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
☆18Updated last year
Alternatives and similar repositories for gficf
Users that are interested in gficf are comparing it to the libraries listed below
Sorting:
- ☆32Updated 7 months ago
- ☆37Updated last year
- ☆49Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- ☆39Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 9 months ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- ☆12Updated last year
- ☆29Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Single-cell Case Control Analysis☆52Updated 9 months ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Network construction Algorithm☆22Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago