gambalab / gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
☆18Updated last year
Alternatives and similar repositories for gficf:
Users that are interested in gficf are comparing it to the libraries listed below
- ☆30Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- ☆33Updated 10 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- ☆45Updated 7 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- ☆29Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 4 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆20Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- ☆37Updated 3 years ago
- ☆12Updated 5 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- cell type specific, trait-associated gene regulation☆21Updated 2 weeks ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆31Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆36Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago