☆16Feb 25, 2017Updated 9 years ago
Alternatives and similar repositories for NMFEM
Users that are interested in NMFEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆10Mar 15, 2024Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- ☆88Jul 13, 2020Updated 6 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆53Jun 6, 2025Updated last year
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- ☆35Jun 7, 2019Updated 7 years ago
- ☆13May 14, 2019Updated 7 years ago
- ☆12Sep 10, 2026Updated last month
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆115Apr 7, 2026Updated 6 months ago
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Jun 2, 2020Updated 6 years ago
- Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data☆11Jan 10, 2024Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- ☆17Sep 20, 2020Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- small R utility for mediation analysis☆10Feb 17, 2017Updated 9 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- ☆37Jun 15, 2026Updated 4 months ago
- This network estimation procedure combines l1-regularized logistic regression with model selection based on the Extended Bayesian Informa…☆10Oct 12, 2023Updated 3 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- ☆10Apr 7, 2023Updated 3 years ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 10 months ago
- Model selection and stability plots☆12Oct 4, 2026Updated last month
- Data and analysis for the Splatter paper☆31Dec 4, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Jul 18, 2021Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- ☆24Jun 17, 2024Updated 2 years ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆24Jan 8, 2018Updated 8 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Markov chain Monte Carlo with Metropolis-Hasting algorithm☆19Jun 23, 2025Updated last year
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago