Alternatives and similar repositories for nezzle

Users that are interested in nezzle are comparing it to the libraries listed below

• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 3 months ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• salbrec / seqQscorer
  ☆22Updated 2 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆17Updated this week
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 5 months ago
• datapplab / SBGNview
  ☆27Updated 2 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 4 months ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 4 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆17Updated 3 weeks ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• interactivereport / xOmicsShiny
  R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
  ☆31Updated last month
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆28Updated 3 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆52Updated this week
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• pachterlab / qcbc
  ☆20Updated last month
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated 9 months ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• openvax / isovar
  Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
  ☆25Updated 9 months ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month