Alternatives and similar repositories for nezzle

Users that are interested in nezzle are comparing it to the libraries listed below

• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 4 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 6 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• nasqar / NASQAR
  NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
  ☆32Updated 5 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆25Updated 11 months ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 4 years ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated last week
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 3 weeks ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆52Updated last month
• fogellab / multiWGCNA
  an R package for deep mining gene co-expression networks in multi-trait expression data
  ☆20Updated last month
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆19Updated 3 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 2 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆35Updated last month
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• fusiontranscripts / FusionBenchmarking
  Toolkit for benchmarking fusion transcript predictions
  ☆19Updated 11 months ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated 9 months ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆31Updated last week