Alternatives and similar repositories for treeclimbR

Users that are interested in treeclimbR are comparing it to the libraries listed below

• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated 3 weeks ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated last month
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 5 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆15Updated last year
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated last month
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated last week
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated last month
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated 7 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last year
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Updated 5 years ago
• StoreyLab / superSeq
  Assessing the increase in power from increasing read depth in a given RNA-Seq study
  ☆13Updated 6 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated 2 weeks ago
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated last month
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 2 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 2 weeks ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 3 months ago
• Bioconductor / bioconductor_full
  [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages
  ☆25Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 6 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆30Updated 11 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago