Alternatives and similar repositories for ml4bio

Users that are interested in ml4bio are comparing it to the libraries listed below

• carpentries-incubator / ml4bio-workshop
  Materials for a workshop introducing machine learning to biologists
  ☆24Updated 10 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆45Updated 3 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆44Updated 2 weeks ago
• pachterlab / qcbc
  ☆20Updated 8 months ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 8 months ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated last month
• ngs-docs / 2021-GGG298
  Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
  ☆12Updated 4 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated last year
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last week
• collinwa / MCFA
  ☆21Updated 2 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 4 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• andrewGhazi / malacoda
  Bayesian analysis of MPRA and other high-throughput genomic assays
  ☆10Updated 5 years ago
• ryangreenj / bioinformatics_tool_recommendation
  ☆19Updated 2 years ago
• kuanrongchan / STAGES
  ☆36Updated 11 months ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆18Updated last year
• fmicompbio / mutscan
  Software to process, statistically analyse and visualise deep mutational scanning data
  ☆14Updated 3 months ago
• krishnanlab / RNAseq_coexpression
  In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.
  ☆15Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated this week
• SchlossLab / snakemake_cluster_tutorial
  Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.
  ☆15Updated 3 years ago
• ArcInstitute / ScreenPro2
  Flexible analysis of high-content CRISPR screening
  ☆31Updated 5 months ago
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆20Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 6 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago