☆20May 30, 2022Updated 3 years ago
Alternatives and similar repositories for CellPath
Users that are interested in CellPath are comparing it to the libraries listed below
Sorting:
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Nov 12, 2024Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- trajectory inference☆107Jan 27, 2025Updated last year
- ☆19Mar 31, 2023Updated 2 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- ☆14Oct 17, 2024Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 4 years ago
- Cell cycle inference in single-cell RNA-seq☆50Apr 25, 2023Updated 2 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆78Feb 21, 2024Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- CellRank: dynamics from multi-view single-cell data☆433Mar 9, 2026Updated last week
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- ☆35Nov 29, 2021Updated 4 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 8 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 4 months ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Mar 3, 2026Updated 2 weeks ago
- ☆17Updated this week
- CellRank's reproducibility repository.☆16Jan 13, 2022Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆11Jul 6, 2021Updated 4 years ago
- ☆15Mar 15, 2023Updated 3 years ago
- ☆49Feb 7, 2024Updated 2 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- ☆12Apr 16, 2021Updated 4 years ago
- ☆12Nov 19, 2023Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 6 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- ☆13Sep 3, 2025Updated 6 months ago
- ☆34Apr 15, 2025Updated 11 months ago