PeterZZQ / CellPath
☆21Updated 2 years ago
Alternatives and similar repositories for CellPath:
Users that are interested in CellPath are comparing it to the libraries listed below
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Python implementation of Gene Trajectory☆25Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆20Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- ☆26Updated last year
- CAST package☆34Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 2 weeks ago
- A set of files to do genomics analysis on python☆18Updated 5 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 9 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated last month
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 7 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- ☆12Updated last month