PeterZZQ / CellPathLinks
☆20Updated 3 years ago
Alternatives and similar repositories for CellPath
Users that are interested in CellPath are comparing it to the libraries listed below
Sorting:
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆26Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- ☆13Updated 3 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- CAST package☆41Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- ☆40Updated this week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Single cell omics biology annotations☆51Updated 8 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Parse ArchR arrow files to anndata h5ad☆15Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆46Updated last year
- ☆25Updated 8 months ago
- Python implementation of Gene Trajectory☆30Updated last year
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago