PeterZZQ / CellPathLinks
☆20Updated 3 years ago
Alternatives and similar repositories for CellPath
Users that are interested in CellPath are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- CAST package☆42Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- R implementation of GeneTrajectory☆69Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last week
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- ☆26Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- ☆46Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆13Updated 5 months ago
- ☆47Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆32Updated 11 months ago
- ☆62Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago