CostaLab / scrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics data
☆20Updated last month
Alternatives and similar repositories for scrna_seurat_pipeline:
Users that are interested in scrna_seurat_pipeline are comparing it to the libraries listed below
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆16Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- scWGCNA☆59Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- ☆47Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 5 months ago
- ☆13Updated 7 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- ☆30Updated 3 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- ☆49Updated 8 months ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- ☆26Updated 6 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆18Updated last year
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year