CostaLab / scrna_seurat_pipelineView external linksLinks
comprehensive analysis of single-cell transcriptomics data
☆25Dec 17, 2025Updated last month
Alternatives and similar repositories for scrna_seurat_pipeline
Users that are interested in scrna_seurat_pipeline are comparing it to the libraries listed below
Sorting:
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- R package to do the Ligand Receptor Analysis Visualization☆49Nov 27, 2025Updated 2 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- ☆15Feb 28, 2022Updated 3 years ago
- ☆16May 23, 2022Updated 3 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 5 years ago
- This repository contains the source code for the tappAS application. See README for details.☆20Dec 18, 2025Updated last month
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- Repository for supplemental material of manuscripts☆18Jun 30, 2021Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Publication Page for ArchR Manuscript 2020☆23Aug 17, 2021Updated 4 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- Sorting and subsampling phylogenomic datasets☆28Apr 9, 2025Updated 10 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- Metacell - Single-cell mRNA Analysis☆120Jan 26, 2025Updated last year
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Apr 4, 2025Updated 10 months ago
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 2 months ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- ☆10May 31, 2022Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Jul 15, 2025Updated 7 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Dec 15, 2022Updated 3 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆17Jan 12, 2023Updated 3 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- ☆45Jan 28, 2026Updated 2 weeks ago