CostaLab / scrna_seurat_pipelineLinks
comprehensive analysis of single-cell transcriptomics data
☆25Updated 8 months ago
Alternatives and similar repositories for scrna_seurat_pipeline
Users that are interested in scrna_seurat_pipeline are comparing it to the libraries listed below
Sorting:
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 7 months ago
- scWGCNA☆61Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- ☆19Updated 5 months ago
- R package of CSOmap(developing☆13Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆24Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆47Updated 11 months ago
- ☆39Updated 4 years ago
- ☆32Updated 4 years ago
- Network construction Algorithm☆22Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- ☆32Updated 10 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆52Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆29Updated 4 years ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆18Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- ☆47Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆61Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- ☆25Updated 4 months ago