R package for Protein activity analysis of single-cell RNAseq.
☆86Dec 15, 2022Updated 3 years ago
Alternatives and similar repositories for PISCES
Users that are interested in PISCES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Feb 16, 2026Updated 3 months ago
- ☆50Jan 16, 2020Updated 6 years ago
- Network Reverse Engineering through AP inference of Mutual Information☆88Mar 6, 2023Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆180Feb 18, 2026Updated 3 months ago
- ☆89Jun 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14Jun 2, 2026Updated last week
- R package to do the Ligand Receptor Analysis Visualization☆50Apr 30, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆647Mar 11, 2026Updated 2 months ago
- ☆32Jan 3, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆17Nov 30, 2024Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Hierarchical Cell Annotation☆30Nov 17, 2024Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- Scissor package☆267May 10, 2024Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆147Jul 19, 2021Updated 4 years ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆36Dec 10, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆25Aug 15, 2023Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆155Nov 10, 2023Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated 3 weeks ago
- ☆30Mar 18, 2022Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆66Feb 8, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆107Dec 21, 2024Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆82Mar 1, 2026Updated 3 months ago
- ☆17Sep 16, 2024Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago