Alternatives and similar repositories for DeepLC

Users that are interested in DeepLC are comparing it to the libraries listed below

• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 8 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated 3 weeks ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆132Updated 2 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆87Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆44Updated last week
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 3 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆91Updated this week
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated 3 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 8 months ago
• pFindStudio / pGlyco3
  ☆20Updated 9 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆77Updated this week
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆106Updated last year
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 5 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated last month
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated 2 weeks ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆122Updated 4 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆20Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 10 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆88Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆30Updated 11 months ago
• gagneurlab / spectralis
  ☆14Updated last year
• MatteoLacki / timspy
  ☆22Updated 4 years ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆28Updated last week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆49Updated this week
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆84Updated last week
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆43Updated 3 years ago
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆91Updated 2 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆60Updated this week