CompOmics / DeepLCLinks
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
☆72Updated 2 months ago
Alternatives and similar repositories for DeepLC
Users that are interested in DeepLC are comparing it to the libraries listed below
Sorting:
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- ☆20Updated 9 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- Instrument Application Programming Interface☆51Updated 2 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆28Updated 11 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- modular & open DIA search☆93Updated this week
- A deep learning toolkit for mass spectrometry☆85Updated last month
- ☆15Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 5 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆169Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- ☆22Updated 4 years ago
- ☆13Updated last year
- A collection of available Python tools for Proteomics analysis☆65Updated 6 years ago