DeepLC: Retention time prediction for peptides carrying any modification.
☆75Apr 24, 2026Updated this week
Alternatives and similar repositories for DeepLC
Users that are interested in DeepLC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated 2 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Apr 11, 2026Updated 2 weeks ago
- ☆12Mar 26, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Feb 12, 2026Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Apr 27, 2022Updated 4 years ago
- An open-source Python package to unify raw MS data accession and storage.☆32Apr 13, 2026Updated 2 weeks ago
- ☆13Mar 19, 2024Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 10 months ago
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆54Sep 17, 2021Updated 4 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆153Apr 16, 2026Updated last week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 2 years ago
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆102Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated last week
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated this week
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆242Mar 7, 2026Updated last month
- Interpretation of proteomics identification results☆54Mar 21, 2026Updated last month
- R package - MSstats☆96Updated this week
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆185Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated last month
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Deep learning framework for proteomics☆150Apr 21, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 10 months ago
- Retip - Retention Time prediction for metabolomics☆31Jun 6, 2024Updated last year
- A library for deisotoping and charge state deconvolution of complex mass spectra☆41Jul 30, 2025Updated 9 months ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Proteomics search & quantification so fast that it feels like magic☆288Apr 21, 2026Updated last week
- Libraries for fine isotopic structure calculator.☆42Mar 27, 2026Updated last month
- ☆15Oct 16, 2023Updated 2 years ago