MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
☆84Oct 23, 2025Updated 4 months ago
Alternatives and similar repositories for msgfplus
Users that are interested in msgfplus are comparing it to the libraries listed below
Sorting:
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- ☆15Apr 27, 2022Updated 3 years ago
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- ☆13Mar 19, 2024Updated 2 years ago
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆108Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Jan 13, 2026Updated 2 months ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- ☆10Mar 4, 2026Updated 2 weeks ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 3 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 11 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated 2 months ago
- ☆24Feb 26, 2023Updated 3 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆46Jun 27, 2022Updated 3 years ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆19Oct 23, 2025Updated 4 months ago
- Interpretation of proteomics identification results☆53Nov 26, 2025Updated 3 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- ☆15May 30, 2025Updated 9 months ago
- Open source Java library for computational proteomics☆34Feb 25, 2026Updated 3 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 13, 2026Updated last week
- C# Mass Spectrometry Library☆40Jun 14, 2022Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆48Feb 11, 2026Updated last month
- A cross-platform proteomics data analysis suite☆282Updated this week
- R package - MSstats☆92Updated this week
- The codebase of the OpenMS project☆575Updated this week
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆299Updated this week
- Libraries for fine isotopic structure calculator.☆41Feb 17, 2026Updated last month
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 3 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Mar 11, 2026Updated last week
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago