ProteomicsML / ProteomicsMLLinks
Community-curated tutorials and datasets for ML in proteomics
☆55Updated last month
Alternatives and similar repositories for ProteomicsML
Users that are interested in ProteomicsML are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- Democratizing ML in proteomics☆43Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Deep learning framework for proteomics☆132Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated 2 weeks ago
- A list of tools on proteomics using deep learning☆106Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 9 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- ☆66Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆27Updated 11 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- ☆20Updated 8 months ago
- A Python interface to proteomics data repositories☆35Updated 4 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- Comprehensive Python client for the Uniprot REST API☆52Updated 3 weeks ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆141Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆119Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week