CompOmics / ms2rescoreLinks
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
☆59Updated last month
Alternatives and similar repositories for ms2rescore
Users that are interested in ms2rescore are comparing it to the libraries listed below
Sorting:
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 3 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆51Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 4 months ago
- Deep learning framework for proteomics☆128Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- ☆38Updated 4 months ago
- ☆20Updated 5 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆91Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- ☆20Updated 4 years ago
- modular & open DIA search☆73Updated this week
- Python package for efficient mass spectrometry data processing and visualization☆152Updated 3 months ago
- Instrument Application Programming Interface☆47Updated 5 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 2 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- A list of tools on proteomics using deep learning☆97Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week