Alternatives and similar repositories for ms2rescore

Users that are interested in ms2rescore are comparing it to the libraries listed below

• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆64Updated last month
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated 2 weeks ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated last week
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆56Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 2 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆71Updated this week
• gtluu / timsconvert
  ☆37Updated 2 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆30Updated 3 months ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated last month
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• MatteoLacki / timspy
  ☆20Updated 3 years ago
• gagneurlab / spectralis
  ☆14Updated 8 months ago
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated last month
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 3 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 3 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated last month
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated last year
• mafreitas / tdf2mzml
  ☆26Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆49Updated last week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated 2 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆87Updated 2 months ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆21Updated last month
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆79Updated 3 years ago