michalsta / opentimsLinks
Open-source C++ and Python module for opening binary timsTOF data files.
☆49Updated 5 months ago
Alternatives and similar repositories for opentims
Users that are interested in opentims are comparing it to the libraries listed below
Sorting:
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 3 weeks ago
- ☆22Updated 4 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- ☆44Updated 8 months ago
- ☆29Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Instrument Application Programming Interface☆51Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- modular & open DIA search☆93Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated 2 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Updated last month
- ☆64Updated 8 months ago
- Matthew The's implementation of MaRaCluster☆11Updated 5 months ago
- Python package for efficient mass spectrometry data processing and visualization☆159Updated last week
- ☆27Updated 6 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated 2 months ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated this week
- A list of tools on proteomics using deep learning☆106Updated last year
- Streamlining Mass Spectrometry Data Visualization with Pandas☆20Updated last month
- A diaPASEF spectrum-centric analysis tool☆13Updated 5 months ago