Alternatives and similar repositories for opentims

Users that are interested in opentims are comparing it to the libraries listed below

• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆89Updated 2 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆74Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated last week
• gtluu / timsconvert
  ☆39Updated 5 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆49Updated 6 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated last month
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆47Updated last week
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆47Updated this week
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆45Updated 5 months ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 6 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆131Updated last week
• bittremieux-lab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆155Updated 5 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆85Updated last week
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆15Updated 2 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 3 weeks ago
• Nesvilab / diaTracer
  A diaPASEF spectrum-centric analysis tool
  ☆13Updated last month
• thermofisherlsms / RawFileReader
  ☆61Updated 5 months ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated last month
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆59Updated 4 months ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆103Updated last year
• Noble-Lab / Carafe
  High quality in silico spectral library generation for data-independent acquisition proteomics
  ☆16Updated last week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 5 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆27Updated last week
• pFindStudio / pGlyco3
  ☆20Updated 6 months ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆20Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated last week