CompOmics / ms2pipLinks
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
☆46Updated 6 months ago
Alternatives and similar repositories for ms2pip
Users that are interested in ms2pip are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 7 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 weeks ago
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- ☆20Updated 7 months ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 2 months ago
- ☆14Updated 3 years ago
- Python framework for Deep Learning in Proteomics☆30Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- ☆13Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- Democratizing ML in proteomics☆43Updated last month
- Deep learning framework for proteomics☆132Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆28Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last year
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆45Updated 5 months ago
- ☆14Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- ☆22Updated 4 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- modular & open DIA search☆75Updated this week
- ☆41Updated 6 months ago
- A Python interface to proteomics data repositories☆35Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated last month