Alternatives and similar repositories for ms2pip

Users that are interested in ms2pip are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 6 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 8 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated 2 weeks ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated 3 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated 3 weeks ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated last month
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆30Updated last month
• pFindStudio / pGlyco3
  ☆20Updated 7 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆48Updated 2 weeks ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆86Updated 3 weeks ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆50Updated 7 months ago
• abdrakhimov1 / Biosaur
  ☆14Updated 3 years ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆131Updated 2 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆27Updated 3 weeks ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆17Updated 2 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated 2 weeks ago
• gtluu / timsconvert
  ☆39Updated 6 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 2 months ago
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆44Updated 4 months ago
• crux-toolkit / crux-toolkit
  ☆37Updated last week
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆80Updated last year
• markmipt / ms1searchpy
  ☆12Updated 3 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆75Updated this week