MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
☆50Jul 13, 2026Updated 2 months ago
Alternatives and similar repositories for ms2pip
Users that are interested in ms2pip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Sep 22, 2026Updated 2 weeks ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 5 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆14Aug 26, 2026Updated last month
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An open-source Python package to unify raw MS data accession and storage.☆35Aug 31, 2026Updated last month
- ☆17Apr 27, 2022Updated 4 years ago
- A label free quantification tool.☆20Jan 13, 2026Updated 8 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆162Sep 24, 2026Updated 2 weeks ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 3 years ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 4 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- DLL and SO from Bruker.☆12Feb 25, 2026Updated 7 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆40Jun 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 2 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆33Mar 27, 2026Updated 6 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 4 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144May 21, 2026Updated 4 months ago
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆250Sep 30, 2026Updated last week
- ☆13Sep 18, 2026Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 6 months ago
- ☆16May 27, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- A deep learning toolkit for mass spectrometry☆96Aug 16, 2026Updated last month
- Python framework for Deep Learning in Proteomics☆42Updated this week
- ☆37Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- Spectral library searching using approximate nearest neighbor techniques.☆51Feb 11, 2026Updated 7 months ago
- Multi-Omics Peptide Generator☆32Nov 6, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A list of tools on proteomics using deep learning☆110May 14, 2026Updated 4 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated this week
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 10 months ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year