Alternatives and similar repositories for ms2pip

Users that are interested in ms2pip are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 8 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated last month
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆49Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated 2 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆31Updated 2 months ago
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆90Updated 2 years ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆132Updated last month
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆62Updated last week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆86Updated 2 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 9 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆20Updated 8 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated this week
• gtluu / timsconvert
  ☆42Updated 7 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated last month
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆28Updated 3 weeks ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆29Updated last week
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated this week
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆106Updated last year
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 3 months ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 4 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆80Updated this week
• abdrakhimov1 / Biosaur
  ☆14Updated 3 years ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆20Updated last week
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆90Updated 2 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated 3 weeks ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year