A python interface to the SAGE search engine for mass spectrometry proteomics
☆15Oct 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for sagepy
Users that are interested in sagepy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.☆17Oct 25, 2026Updated last week
- ☆13Oct 14, 2026Updated 2 weeks ago
- Collisional cross-section prediction for modified and multiconformational peptides☆15Aug 26, 2026Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆60Updated this week
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆16Oct 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 7 years ago
- Proteomics search & quantification so fast that it feels like magic☆317Oct 22, 2026Updated last week
- Matthew The's implementation of MaRaCluster☆11Sep 21, 2026Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Oct 9, 2026Updated 3 weeks ago
- ☆48Jan 20, 2026Updated 9 months ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- ☆39Oct 23, 2026Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆32Jul 16, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DL model to predict HLA peptide presentation☆17Jan 31, 2024Updated 2 years ago
- The Biochemical Algorithms Library in Julia☆29Updated this week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆53Updated this week
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆24Oct 15, 2026Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated 2 months ago
- HUPO-PSI Standardized peptidoform notation☆27Aug 14, 2026Updated 2 months ago
- ☆29Updated this week
- ☆13Aug 20, 2020Updated 6 years ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantitative features for mass spectrometry data☆30Sep 3, 2026Updated last month
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆16Oct 13, 2026Updated 2 weeks ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- LIMPA DAVIS Proteomics Pipeline☆22Updated this week
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Updated this week
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆16Oct 23, 2026Updated last week
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 7 months ago
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆53Sep 1, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆34Apr 19, 2021Updated 5 years ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆37Aug 22, 2026Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆62Updated this week
- Democratizing ML in proteomics☆58Updated this week
- Python tools for proteogenomics analysis toolkit☆19May 23, 2026Updated 5 months ago
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- Universal Deconvolution of Mass and Ion Mobility Spectra☆92Updated this week