Alternatives and similar repositories for sagepy

Users that are interested in sagepy are comparing it to the libraries listed below

• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated last week
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆19Updated last month
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• Nesvilab / diaTracer
  A diaPASEF spectrum-centric analysis tool
  ☆13Updated last month
• MannLabs / timsrust
  ☆26Updated last month
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 4 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 4 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• mafreitas / tdf2mzml
  ☆26Updated last year
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last week
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆20Updated 4 months ago
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation
  ☆30Updated this week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆25Updated 2 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• gtluu / timsconvert
  ☆37Updated 3 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 3 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated 3 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last week
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆87Updated 3 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 3 months ago
• QuantSysBio / inSPIRE
  in silico Spectral Predictor Informed REscoring
  ☆21Updated this week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 4 months ago
• mgleeming / synthedia
  Create synthetic DIA LC-MS/MS for proteomics experiments
  ☆15Updated 2 years ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated 3 weeks ago
• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated 3 weeks ago
• wilhelm-lab / spectrum_fundamentals
  Fundamentals public repo
  ☆10Updated 2 weeks ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 3 months ago