wfondrie / depthchargeLinks
A deep learning toolkit for mass spectrometry
☆83Updated last year
Alternatives and similar repositories for depthcharge
Users that are interested in depthcharge are comparing it to the libraries listed below
Sorting:
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆163Updated this week
- Democratizing ML in proteomics☆44Updated 2 months ago
- Deep learning framework for proteomics☆132Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- modular & open DIA search☆80Updated last week
- ☆20Updated 8 months ago
- ☆14Updated last year
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 4 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆19Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- Matthew The's implementation of MaRaCluster☆11Updated 4 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- Python package for efficient mass spectrometry data processing and visualization☆157Updated 7 months ago
- Python framework for Deep Learning in Proteomics☆31Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆141Updated 2 weeks ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23Updated 5 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆123Updated 2 weeks ago
- Instrument Application Programming Interface☆51Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 4 months ago
- Paper collection about de novo peptide Sequening☆19Updated 8 months ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆41Updated 3 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆101Updated 2 weeks ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated 3 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month