Alternatives and similar repositories for depthcharge

Users that are interested in depthcharge are comparing it to the libraries listed below

• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆142Updated 2 weeks ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆127Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated 2 weeks ago
• gagneurlab / spectralis
  ☆14Updated 8 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆71Updated this week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 2 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated this week
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆97Updated last year
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆16Updated 9 months ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆19Updated 6 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆16Updated 4 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• QuantSysBio / inSPIRE
  in silico Spectral Predictor Informed REscoring
  ☆21Updated last month
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆11Updated 3 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated last week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆27Updated last month
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆87Updated 2 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated last month
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 3 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆128Updated 3 weeks ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated 2 weeks ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆56Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆69Updated this week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆119Updated last month
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• Nesvilab / diaTracer
  A diaPASEF spectrum-centric analysis tool
  ☆13Updated last month