usnistgov / UniSpecLinks
Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.
☆12Updated 8 months ago
Alternatives and similar repositories for UniSpec
Users that are interested in UniSpec are comparing it to the libraries listed below
Sorting:
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 3 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆23Updated 11 months ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆33Updated 2 years ago
- ☆36Updated 5 months ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Updated 7 years ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆14Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆28Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆50Updated last week
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆15Updated 2 years ago
- ☆14Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆29Updated last week
- ☆12Updated 2 weeks ago
- ☆18Updated 6 years ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆41Updated 6 years ago
- ☆16Updated last week
- EasyPQP: Simple library generation for OpenSWATH☆11Updated 2 weeks ago
- De novo peptide sequencing for DDA and DIA by deep learning☆38Updated 4 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- MSDK source code repository☆40Updated 3 years ago
- Fundamentals public repo☆11Updated last week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆55Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆25Updated last week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Updated 3 years ago
- ☆22Updated 2 months ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated 3 weeks ago