Alternatives and similar repositories for denovopipeline:

Users that are interested in denovopipeline are comparing it to the libraries listed below

• gagneurlab / spectralis
  ☆13Updated 6 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆52Updated 4 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 5 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 2 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆66Updated 2 years ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆24Updated last year
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆36Updated last month
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆62Updated last week
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆55Updated 5 years ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆93Updated 10 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆72Updated 11 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆58Updated 10 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆82Updated last year
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆122Updated this week
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 9 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆36Updated 3 months ago
• AmadeusloveIris / GraphNovo
  ☆13Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated last week
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆22Updated 5 months ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆83Updated last year
• ntranoslab / esm-variants
  ☆71Updated last year
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated 3 weeks ago
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆20Updated 3 weeks ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 11 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 3 years ago
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• PayneLab / ProteomicsEducation
  ☆29Updated 7 months ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago