denisbeslic / denovopipelineLinks
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
☆41Updated last year
Alternatives and similar repositories for denovopipeline
Users that are interested in denovopipeline are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- HLA-I ligand predictor☆42Updated 8 months ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated 10 months ago
- Deep learning framework for proteomics☆131Updated last week
- ☆77Updated last year
- ☆14Updated 10 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 11 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- ☆20Updated 6 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆39Updated 2 months ago
- ☆15Updated last year
- MS/MS prediction for peptides☆24Updated 4 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- python tools for TCR:peptide-MHC modeling and analysis☆81Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆25Updated 10 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- A collection of available Python tools for Proteomics analysis☆59Updated 6 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated this week
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 4 months ago
- ☆92Updated 2 months ago
- Evolutionary velocity with protein language models☆94Updated last year