Deep learning framework for proteomics
☆156Jul 24, 2026Updated this week
Alternatives and similar repositories for alphapeptdeep
Users that are interested in alphapeptdeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- modular & open DIA search☆111Updated this week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆191Apr 19, 2024Updated 2 years ago
- ☆34Jul 16, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Democratizing ML in proteomics☆57Updated this week
- Infrastructure of AlphaX ecosystem☆56Updated this week
- A list of tools on proteomics using deep learning☆109May 14, 2026Updated 2 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated 2 weeks ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆88Nov 21, 2025Updated 8 months ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆99Jun 3, 2026Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Jul 18, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆33Jun 30, 2026Updated 3 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Updated this week
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆41Jun 2, 2026Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Jul 13, 2026Updated last week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated last week
- ☆26Updated this week
- A cross-platform proteomics data analysis suite☆312Updated this week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆50Updated this week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆462Jun 30, 2026Updated 3 weeks ago
- Python framework for Deep Learning in Proteomics☆41Jun 25, 2026Updated last month
- Data Processing Kitchen Sink for proteomics data☆14Jun 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- Instrument Application Programming Interface☆57May 11, 2026Updated 2 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated last month
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last week
- ☆24Feb 26, 2023Updated 3 years ago
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year