Deep learning framework for proteomics
☆156Jul 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for alphapeptdeep
Users that are interested in alphapeptdeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- modular & open DIA search☆112Updated this week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆192Apr 19, 2024Updated 2 years ago
- ☆35Jul 16, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Democratizing ML in proteomics☆57Updated this week
- A list of tools on proteomics using deep learning☆108May 14, 2026Updated 3 months ago
- Infrastructure of AlphaX ecosystem☆56Updated this week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆195Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆88Nov 21, 2025Updated 8 months ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Aug 5, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆33Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆111Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Jul 22, 2026Updated 3 weeks ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆42Jul 26, 2026Updated 2 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated last week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated 3 weeks ago
- ☆26Aug 4, 2026Updated last week
- A cross-platform proteomics data analysis suite☆314Aug 7, 2026Updated last week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Aug 7, 2026Updated last week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated 2 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆471Jun 30, 2026Updated last month
- Python framework for Deep Learning in Proteomics☆41Updated this week
- Data Processing Kitchen Sink for proteomics data☆15Jun 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated 2 months ago
- Instrument Application Programming Interface☆57May 11, 2026Updated 3 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated 2 months ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 weeks ago
- ☆24Feb 26, 2023Updated 3 years ago
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year