Deep learning framework for proteomics
☆149Apr 8, 2026Updated this week
Alternatives and similar repositories for alphapeptdeep
Users that are interested in alphapeptdeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated last year
- Infrastructure of AlphaX ecosystem☆55Feb 27, 2026Updated last month
- A list of tools on proteomics using deep learning☆107May 5, 2024Updated last year
- modular & open DIA search☆106Apr 2, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆184Apr 5, 2026Updated last week
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Apr 7, 2026Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆86Nov 21, 2025Updated 4 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Mar 18, 2026Updated 3 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆287Mar 31, 2026Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆151Mar 11, 2026Updated last month
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆108Apr 6, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Updated this week
- ☆28May 20, 2025Updated 10 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- Python framework for Deep Learning in Proteomics☆40Mar 31, 2026Updated 2 weeks ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- A cross-platform proteomics data analysis suite☆286Updated this week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆436Feb 5, 2026Updated 2 months ago
- Instrument Application Programming Interface☆54Sep 29, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- Data Processing Kitchen Sink for proteomics data☆13Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Feb 12, 2026Updated 2 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆75Apr 2, 2026Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆37Mar 18, 2026Updated 3 weeks ago
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 4 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated 3 weeks ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 weeks ago
- ☆24Feb 26, 2023Updated 3 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆20Mar 31, 2026Updated 2 weeks ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆28Mar 19, 2026Updated 3 weeks ago