Alternatives and similar repositories for mokapot

Users that are interested in mokapot are comparing it to the libraries listed below

• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated last month
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 3 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 5 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆20Updated 4 months ago
• MannLabs / timsrust
  ☆26Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated 2 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆25Updated 2 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆21Updated 2 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆49Updated 2 weeks ago
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 2 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated last week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 3 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 2 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆25Updated 7 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆87Updated 2 months ago
• jspaezp / elfragmentador
  This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…
  ☆10Updated 7 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆43Updated last month
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated 3 weeks ago