Fast and flexible semi-supervised learning for peptide detection in Python
☆52Sep 1, 2026Updated last month
Alternatives and similar repositories for mokapot
Users that are interested in mokapot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Nov 22, 2024Updated last year
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for summarizing open search results☆17Updated this week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Oct 6, 2026Updated last week
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆33Mar 27, 2026Updated 6 months ago
- A label free quantification tool.☆20Jan 13, 2026Updated 9 months ago
- ☆17Apr 27, 2022Updated 4 years ago
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- ☆39Oct 8, 2026Updated last week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Oct 10, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆58Updated this week
- A deep learning toolkit for mass spectrometry☆96Oct 9, 2026Updated last week
- ☆16May 27, 2026Updated 4 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 3 months ago
- ☆17Oct 9, 2026Updated last week
- Libraries for fine isotopic structure calculator.☆48Oct 6, 2026Updated last week
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆204Updated this week
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆131Oct 7, 2026Updated last week
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- Proteomics search & quantification so fast that it feels like magic☆315Updated this week
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Oct 10, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Oct 9, 2026Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆143May 21, 2026Updated 4 months ago
- Democratizing ML in proteomics☆57Sep 15, 2026Updated last month
- A list of tools on proteomics using deep learning☆110May 14, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆37Oct 5, 2026Updated last week
- ☆23Oct 8, 2026Updated last week
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- Peptide Correlation analysis☆13Oct 3, 2024Updated 2 years ago
- AutoRT: Peptide retention time prediction using deep learning☆31Jul 31, 2024Updated 2 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆52Oct 3, 2026Updated 2 weeks ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆16Jun 25, 2026Updated 3 months ago