wfondrie / ppx
A Python interface to proteomics data repositories
☆34Updated 2 months ago
Alternatives and similar repositories for ppx:
Users that are interested in ppx are comparing it to the libraries listed below
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆45Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- ☆59Updated last year
- ☆26Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated last month
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated 2 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated 3 weeks ago
- A library for QC report based on MultiQC framework☆14Updated 2 weeks ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- ☆37Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated last week
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆26Updated last week
- ☆13Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 5 months ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Python client for PRIDE Archive Rest API.☆23Updated 3 weeks ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Updated 5 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated last week
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 3 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆85Updated 3 weeks ago
- A label free quantification tool.☆17Updated this week
- ☆10Updated last week
- Data Processing Kitchen Sink for proteomics data☆11Updated last week
- A Rust library for parsing ProForma peptides and matching them against MS spectra, formally known as rustyms☆27Updated last week