wfondrie / ppxLinks
A Python interface to proteomics data repositories
☆35Updated 2 months ago
Alternatives and similar repositories for ppx
Users that are interested in ppx are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- ☆64Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆44Updated 4 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- Python client for PRIDE Archive Rest API.☆24Updated 4 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 5 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 3 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- ☆39Updated 5 months ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- ☆28Updated 3 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆47Updated this week
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- pathway and network analysis for metabolomics☆42Updated last year
- ☆14Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated 2 weeks ago
- A library for QC report based on MultiQC framework☆16Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 3 weeks ago
- A label free quantification tool.☆17Updated 2 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆60Updated 2 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Instrument Application Programming Interface☆49Updated 6 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 9 months ago