wfondrie / ppx
A Python interface to proteomics data repositories
☆33Updated 2 weeks ago
Alternatives and similar repositories for ppx:
Users that are interested in ppx are comparing it to the libraries listed below
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 3 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- A library for QC report based on MultiQC framework☆14Updated this week
- Python package for investigating the structural context of PTMs☆28Updated 2 months ago
- ☆59Updated 10 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- ☆25Updated last month
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated this week
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- ☆36Updated last week
- MS/MS prediction for peptides☆22Updated 4 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆24Updated 3 months ago
- Python client for PRIDE Archive Rest API.☆21Updated this week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- A label free quantification tool.☆16Updated 9 months ago
- ☆13Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆24Updated last year
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated 4 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆17Updated this week
- ☆15Updated 3 years ago
- Differential Expression Analysis tool box R lang package for omics data☆44Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆61Updated 3 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆39Updated last week