Alternatives and similar repositories for ms1searchpy:

Users that are interested in ms1searchpy are comparing it to the libraries listed below

• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 2 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated 2 weeks ago
• abdrakhimov1 / Biosaur
  ☆14Updated 2 years ago
• levitsky / identipy
  ☆10Updated 5 months ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆16Updated 9 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 2 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆21Updated this week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 3 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 2 weeks ago
• orsburn / LCMSMethods
  The Git Account of LCMSMethods.org
  ☆11Updated 5 years ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated last week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆10Updated last month
• CCprofiler / CCprofiler
  Analysis of co-fractionation MS datasets
  ☆11Updated 3 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆59Updated 10 months ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆61Updated last month
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆40Updated this week
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆17Updated this week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 4 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆24Updated last year
• gagneurlab / spectralis
  ☆13Updated 5 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆24Updated 4 months ago