☆12Mar 17, 2026Updated this week
Alternatives and similar repositories for ms1searchpy
Users that are interested in ms1searchpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 16, 2026Updated last week
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 2 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated this week
- ☆15Apr 27, 2022Updated 3 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 2 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- ☆13Mar 19, 2024Updated 2 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆19Feb 27, 2026Updated 3 weeks ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆30Jul 28, 2025Updated 7 months ago
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- ☆10Mar 4, 2026Updated 2 weeks ago
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆54Sep 17, 2021Updated 4 years ago
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆12Mar 17, 2025Updated last year
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆46Jun 27, 2022Updated 3 years ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆41Jul 30, 2025Updated 7 months ago
- Datasets for Drug Discovery and Development☆10Aug 22, 2020Updated 5 years ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- Processing and analysis of proteomics data☆17Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated last week
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 8 months ago
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- ☆17Jun 15, 2022Updated 3 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆151Mar 11, 2026Updated last week
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated 2 months ago
- ☆28May 20, 2025Updated 10 months ago
- ☆17Apr 10, 2021Updated 4 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆100Updated this week
- Chemical Similarity Enrichment analysis of metabolomics datasets☆30Jul 19, 2024Updated last year
- send messages via linux command line via Telegram Bot API☆14Jul 12, 2021Updated 4 years ago