bigbio / proteomics-sample-metadataLinks
The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
☆95Updated last week
Alternatives and similar repositories for proteomics-sample-metadata
Users that are interested in proteomics-sample-metadata are comparing it to the libraries listed below
Sorting:
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆222Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated 3 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆85Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆81Updated 3 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 9 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated last week
- PDV: an integrative proteomics data viewer☆54Updated last month
- ☆64Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- A cross-platform proteomics data analysis suite☆247Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- Report processing and protein quantification for MS-based proteomics☆47Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆47Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- asari, metabolomics data preprocessing☆51Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆89Updated last week
- R package - MSstats☆85Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 4 months ago
- ☆13Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 4 months ago
- Deep learning framework for proteomics☆131Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆47Updated last week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆46Updated last month