The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
☆100Mar 17, 2026Updated this week
Alternatives and similar repositories for proteomics-sample-metadata
Users that are interested in proteomics-sample-metadata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- `sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files☆29Updated this week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆16Mar 16, 2026Updated last week
- ☆15Apr 27, 2022Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Updated this week
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆45Apr 1, 2025Updated 11 months ago
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 16, 2026Updated last week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Feb 19, 2026Updated last month
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆239Mar 7, 2026Updated 2 weeks ago
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆151Mar 11, 2026Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- ☆15May 30, 2025Updated 9 months ago
- Python package for efficient mass spectrometry data processing and visualization☆164Mar 5, 2026Updated 2 weeks ago
- A label free quantification tool.☆18Jan 13, 2026Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Mar 12, 2026Updated last week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated last year
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated last month
- A library for QC report based on MultiQC framework☆29Updated this week
- Proteomics search & quantification so fast that it feels like magic☆278Updated this week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Python module for lipidomics LC MS/MS data analysis☆20Jun 27, 2024Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 9 months ago
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Realtime quality control for mass spectrometry data acquisition☆21Mar 5, 2026Updated 2 weeks ago
- ☆12Updated this week
- Python client for PRIDE Archive Rest API.☆36Feb 6, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 7 months ago
- HUPO-PSI mass spectrometry CV☆40Mar 13, 2026Updated last week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆18Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- R package - MSstats☆93Mar 13, 2026Updated last week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago