SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
☆113Jun 30, 2026Updated this week
Alternatives and similar repositories for proteomics-sample-metadata
Users that are interested in proteomics-sample-metadata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jun 8, 2026Updated 3 weeks ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆24Jun 17, 2026Updated 2 weeks ago
- ☆15Apr 27, 2022Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Jun 24, 2026Updated last week
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆47Jun 12, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Jun 22, 2026Updated last week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Apr 23, 2026Updated 2 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆247Jun 24, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Jun 25, 2026Updated last week
- An open-source Python package to unify raw MS data accession and storage.☆32Jun 2, 2026Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Apr 19, 2026Updated 2 months ago
- ☆16May 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 3 months ago
- A label free quantification tool.☆20Jan 13, 2026Updated 5 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆53Updated this week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jun 19, 2026Updated last week
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 3 months ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆62Feb 10, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A library for QC report based on MultiQC framework☆32Jun 18, 2026Updated 2 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆297Jun 5, 2026Updated 3 weeks ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Python module for lipidomics LC MS/MS data analysis☆20Jun 27, 2024Updated 2 years ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated last year
- Democratizing ML in proteomics☆55May 6, 2026Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jun 19, 2026Updated last week
- Realtime quality control for mass spectrometry data acquisition☆22May 19, 2026Updated last month
- ☆12May 4, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated 3 weeks ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 2 months ago
- HUPO-PSI mass spectrometry CV☆42Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Jun 24, 2026Updated last week
- R package - MSstats☆98Jun 24, 2026Updated last week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Jun 19, 2026Updated last week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆93Aug 17, 2023Updated 2 years ago