MS/MS prediction for peptides
☆25Dec 18, 2020Updated 5 years ago
Alternatives and similar repositories for pDeep3
Users that are interested in pDeep3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated 3 weeks ago
- ☆21Feb 14, 2025Updated last year
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- A python package for protein inference in Mass Spectrometric data analysis.☆10Jun 6, 2022Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆43Aug 22, 2019Updated 6 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 3 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- A label free quantification tool.☆20Jan 13, 2026Updated 6 months ago
- ☆17Apr 27, 2022Updated 4 years ago
- ☆16Jul 2, 2026Updated last month
- ☆35Jul 16, 2026Updated 3 weeks ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Jun 25, 2026Updated last month
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 4 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 4 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆34Mar 3, 2026Updated 5 months ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated 2 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- Libraries for fine isotopic structure calculator.☆43Jul 28, 2026Updated last week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 4 months ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- modular & open DIA search☆111Jul 30, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated last week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Jul 2, 2026Updated last month
- Create synthetic DIA LC-MS/MS for proteomics experiments☆19Mar 16, 2023Updated 3 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 9 months ago
- Implementation of graph convolutional networks to predict chromatographic retention times.☆15Sep 7, 2021Updated 4 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated 2 months ago