Alternatives and similar repositories for GraphNovo

Users that are interested in GraphNovo are comparing it to the libraries listed below

• PHOENIXcenter / pi-HelixNovo
  ☆11Updated 2 weeks ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• PHOENIXcenter / pi-PrimeNovo
  ☆31Updated 2 weeks ago
• gagneurlab / spectralis
  ☆14Updated 8 months ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆16Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 7 months ago
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆25Updated 7 months ago
• mobiusklein / glycresoft
  An LC-MS/MS glycan and glycopeptide search engine
  ☆12Updated 4 months ago
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated last year
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 7 months ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago
• westlake-repl / ProteinLM-TDG2-Mutation
  Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
  ☆18Updated last year
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆29Updated last year
• kingstdio / ECRECer
  Dual-core Multi-agent Learning Framework For EC Number Prediction
  ☆18Updated 7 months ago
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated last year
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last week
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 7 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆39Updated 5 months ago
• cmb-chula / SMSNet
  ☆12Updated 11 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆27Updated last year
• idptools / metapredict
  A machine learning based protein disorder predictor.
  ☆24Updated 6 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago