Alternatives and similar repositories for GraphNovo:

Users that are interested in GraphNovo are comparing it to the libraries listed below

• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆38Updated 11 months ago
• gagneurlab / spectralis
  ☆13Updated 4 months ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆22Updated 4 months ago
• PHOENIXcenter / pi-HelixNovo
  ☆10Updated last month
• PHOENIXcenter / pi-PrimeNovo
  ☆22Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆17Updated last week
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆28Updated last year
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated 2 weeks ago
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆13Updated 6 months ago
• MannLabs / PeptDeep-HLA
  DL model to predict HLA peptide presentation
  ☆14Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 11 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 3 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆49Updated 3 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last month
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆26Updated last month
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆41Updated last month
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆116Updated this week
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆29Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆41Updated 2 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆122Updated this week
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆23Updated last year
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆70Updated 6 months ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated this week
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆66Updated 6 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago