Alternatives and similar repositories for GraphNovo

Users that are interested in GraphNovo are comparing it to the libraries listed below

• gagneurlab / spectralis
  ☆14Updated 11 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• PHOENIXcenter / pi-PrimeNovo
  ☆35Updated 2 weeks ago
• semiller10 / postnovo
  Post-processing peptide de novo sequences to improve their accuracy
  ☆10Updated 2 years ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆25Updated 10 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆31Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆53Updated 9 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆49Updated 10 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated last year
• pFindStudio / pGlyco3
  ☆20Updated 6 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 8 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 10 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆32Updated last week
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 4 months ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆45Updated 5 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 5 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated 11 months ago
• PDB-REDO / AlphaBridge
  ☆40Updated 2 weeks ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• TattaBio / gLM2
  ☆72Updated 10 months ago