Alternatives and similar repositories for GraphNovo

Users that are interested in GraphNovo are comparing it to the libraries listed below

• gagneurlab / spectralis
  ☆14Updated last year
• PHOENIXcenter / pi-PrimeNovo
  ☆41Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆57Updated last year
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• pFindStudio / pGlyco3
  ☆20Updated 9 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• kansil / PROBE
  Trainable representation analysis study repository
  ☆44Updated 3 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 10 months ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆25Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆38Updated 2 weeks ago
• semiller10 / postnovo
  Post-processing peptide de novo sequences to improve their accuracy
  ☆10Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆31Updated 2 years ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 7 months ago
• tymor22 / tm-vec
  ☆74Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆36Updated 2 months ago
• TattaBio / gLM2
  ☆74Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 2 months ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆57Updated 11 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆33Updated this week
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• PHOENIXcenter / pi-HelixNovo
  ☆12Updated last week
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 8 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆29Updated last year