CompOmics / psm_utilsLinks
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆28Updated this week
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 5 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆68Updated 3 weeks ago
- Democratizing ML in proteomics☆39Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆46Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Deep learning framework for proteomics☆129Updated 3 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated last month
- ☆20Updated 5 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated last month
- modular & open DIA search☆73Updated this week
- ☆38Updated 4 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆12Updated 3 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆83Updated 4 months ago
- A deep learning toolkit for mass spectrometry☆81Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆26Updated last month
- Instrument Application Programming Interface☆48Updated 5 months ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 4 months ago
- MS/MS prediction for peptides☆24Updated 4 years ago
- ☆14Updated 10 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 3 months ago
- A list of tools on proteomics using deep learning☆97Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated last week
- Python framework for Deep Learning in Proteomics☆28Updated 2 weeks ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆39Updated last month
- ☆20Updated 4 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated last week