CompOmics / psm_utilsLinks
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆28Updated last month
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆12Updated 2 months ago
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 2 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- ☆38Updated 4 months ago
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- ☆20Updated 5 months ago
- An open-source Python package to unify raw MS data accession and storage.☆26Updated 2 weeks ago
- Python framework for Deep Learning in Proteomics☆27Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 3 months ago
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- MS/MS prediction for peptides☆23Updated 4 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- Deep learning framework for proteomics☆128Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated 2 weeks ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆53Updated 3 weeks ago
- Instrument Application Programming Interface☆47Updated 5 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- modular & open DIA search☆73Updated this week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆45Updated last month
- ☆13Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year