CompOmics / psm_utilsLinks
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆29Updated last month
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 11 months ago
- Democratizing ML in proteomics☆52Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆48Updated 2 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated last week
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆53Updated this week
- Deep learning framework for proteomics☆144Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- ☆21Updated 11 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated 3 months ago
- ☆22Updated 4 years ago
- ☆45Updated 10 months ago
- Python package for investigating the structural context of PTMs☆28Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆82Updated 2 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆44Updated 7 months ago
- Instrument Application Programming Interface☆51Updated 4 months ago
- modular & open DIA search☆100Updated this week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 2 weeks ago
- A Python interface to proteomics data repositories☆36Updated 7 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated last week
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- asari, metabolomics data preprocessing☆58Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- ☆30Updated 2 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated 7 months ago
- ☆15Updated last year
- Python framework for Deep Learning in Proteomics☆38Updated this week