Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆31Jul 16, 2026Updated this week
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collisional cross-section prediction for modified and multiconformational peptides☆14Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Jul 13, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- Democratizing ML in proteomics☆57May 6, 2026Updated 2 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Updated this week
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- ☆34Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Jul 2, 2026Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated last week
- ☆26Updated this week
- ☆23Jun 11, 2026Updated last month
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated last week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13May 4, 2026Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jul 10, 2026Updated last week
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- ☆47Mar 14, 2025Updated last year
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated 3 weeks ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 2 months ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A library for QC report based on MultiQC framework☆34Updated this week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Updated this week
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆33Jun 30, 2026Updated 3 weeks ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆46Jul 10, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Jul 2, 2026Updated 2 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- ☆16May 27, 2026Updated last month
- Infrastructure of AlphaX ecosystem☆56Jun 16, 2026Updated last month
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Jul 10, 2026Updated last week
- ☆15Jan 27, 2022Updated 4 years ago
- ☆13Aug 20, 2020Updated 5 years ago