Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆31Jul 16, 2026Updated last month
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collisional cross-section prediction for modified and multiconformational peptides☆14Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆57Updated this week
- ☆35Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆56Aug 21, 2026Updated last week
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆33Mar 27, 2026Updated 5 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated last month
- ☆27Aug 22, 2026Updated last week
- ☆23Aug 14, 2026Updated 2 weeks ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 4 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Aug 4, 2026Updated 3 weeks ago
- Infrastructure of AlphaX ecosystem☆57Aug 17, 2026Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Aug 5, 2026Updated 3 weeks ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Nov 22, 2024Updated last year
- A deep learning toolkit for mass spectrometry☆95Aug 16, 2026Updated 2 weeks ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 4 months ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- A library for QC report based on MultiQC framework☆34Aug 13, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆36Aug 22, 2026Updated last week
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Updated this week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆197Updated this week
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 3 months ago
- An open-source Python package to unify raw MS data accession and storage.☆34Updated this week
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- ☆49Mar 14, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Differential Expression Analysis tool box R lang package for omics data☆46Aug 11, 2026Updated 2 weeks ago
- ☆17Jul 2, 2026Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- ☆16May 27, 2026Updated 3 months ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Aug 16, 2026Updated 2 weeks ago
- ☆15Jan 27, 2022Updated 4 years ago
- ☆13Aug 20, 2020Updated 6 years ago