CompOmics / psm_utilsLinks
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
☆29Updated last month
Alternatives and similar repositories for psm_utils
Users that are interested in psm_utils are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- ☆20Updated 9 months ago
- Python package for investigating the structural context of PTMs☆28Updated 11 months ago
- ☆22Updated 4 years ago
- Instrument Application Programming Interface☆51Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated 2 years ago
- ☆44Updated 8 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 4 months ago
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- A deep learning toolkit for mass spectrometry☆85Updated last month
- ☆15Updated last year
- A Python interface to proteomics data repositories☆36Updated 5 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated 2 weeks ago
- An open-source Python package to unify raw MS data accession and storage.☆28Updated 3 weeks ago
- ☆29Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- ☆12Updated last month
- Analysis platform for large-scale dose-dependent data☆26Updated 2 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year