Alternatives and similar repositories for ms_deisotope:

Users that are interested in ms_deisotope are comparing it to the libraries listed below

• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated this week
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated 9 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated last year
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 3 years ago
• mafreitas / tdf2mzml
  ☆25Updated last year
• abdrakhimov1 / Biosaur
  ☆14Updated 2 years ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated last week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated 3 weeks ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆25Updated 3 months ago
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 7 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• thermofisherlsms / RawFileReader
  ☆53Updated 4 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated last week
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆43Updated 2 years ago
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆38Updated 5 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆19Updated this week
• gtluu / timsconvert
  ☆35Updated 2 weeks ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆27Updated this week
• mobiusklein / psims
  A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
  ☆20Updated 3 weeks ago
• rusteomics / mzcore
  A Rust library for parsing ProForma peptides and matching them against MS spectra, formally known as rustyms
  ☆24Updated this week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆26Updated 3 weeks ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 2 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆45Updated 2 months ago
• pFindStudio / pGlyco3
  ☆17Updated 5 months ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆10Updated 3 weeks ago