MannLabs / alpharawLinks
An open-source Python package to unify raw MS data accession and storage.
☆31Updated this week
Alternatives and similar repositories for alpharaw
Users that are interested in alpharaw are comparing it to the libraries listed below
Sorting:
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated 3 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆48Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆53Updated last week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Updated last week
- Instrument Application Programming Interface☆51Updated 4 months ago
- modular & open DIA search☆100Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 11 months ago
- ☆45Updated 10 months ago
- Democratizing ML in proteomics☆52Updated last week
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Updated last month
- ☆22Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated 2 weeks ago
- ☆30Updated 2 years ago
- ☆27Updated 8 months ago
- asari, metabolomics data preprocessing☆58Updated 2 weeks ago
- Python framework for Deep Learning in Proteomics☆38Updated this week
- Python package for investigating the structural context of PTMs☆28Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆83Updated 2 months ago
- Deep learning framework for proteomics☆145Updated last week
- MS/MS prediction for peptides☆24Updated 5 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- Matthew The's implementation of MaRaCluster☆11Updated 7 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 3 weeks ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Updated 3 months ago