Alternatives and similar repositories for alpharaw

Users that are interested in alpharaw are comparing it to the libraries listed below

• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆46Updated 6 months ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆27Updated last week
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated 2 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 7 months ago
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆30Updated last month
• gtluu / timsconvert
  ☆41Updated 6 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆49Updated last week
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 2 months ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated last week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 3 months ago
• MatteoLacki / timspy
  ☆22Updated 4 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated last month
• MannLabs / alphadia
  modular & open DIA search
  ☆75Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 8 months ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆13Updated 2 months ago
• pFindStudio / pGlyco3
  ☆20Updated 7 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆90Updated last month
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated last week
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• YuanyueLi / MSEntropy
  Spectral entropy for mass spectrometry data.
  ☆32Updated last week
• MannLabs / timsrust
  ☆28Updated 4 months ago
• markmipt / ms1searchpy
  ☆12Updated last week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 3 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 3 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆20Updated 3 weeks ago
• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆35Updated last week