An open-source Python package to unify raw MS data accession and storage.
☆32Apr 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for alpharaw
Users that are interested in alpharaw are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last week
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- DLL and SO from Bruker.☆12Feb 25, 2026Updated 2 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Apr 11, 2026Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Feb 12, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DeepLC: Retention time prediction for peptides carrying any modification.☆75Apr 24, 2026Updated last week
- ☆29May 20, 2025Updated 11 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated 2 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Mar 18, 2026Updated last month
- Flash entropy search☆17Sep 24, 2023Updated 2 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated 3 weeks ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆95Mar 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Mar 20, 2026Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated last month
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆29Mar 19, 2026Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated last month
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆102Apr 28, 2026Updated last week
- modular & open DIA search☆108Apr 14, 2026Updated 3 weeks ago
- Core Utils for Mass Spectrometry Data☆17Apr 28, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Apr 25, 2026Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated last week
- Spectral entropy for mass spectrometry data.☆36Apr 6, 2026Updated 3 weeks ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆153Apr 28, 2026Updated last week
- Deep learning framework for proteomics☆151Apr 21, 2026Updated last week
- Annotation of in source LC/MS data☆12Oct 19, 2024Updated last year
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 10 months ago
- Paper collection about de novo peptide Sequening☆23Feb 5, 2025Updated last year
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated 2 weeks ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated last week
- R Interface to the ClassyFire REST API☆14Apr 27, 2026Updated last week
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆20Jan 24, 2024Updated 2 years ago
- ☆46Mar 14, 2025Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year