CompOmics / peptide-shakerLinks
Interpretation of proteomics identification results
☆48Updated 3 months ago
Alternatives and similar repositories for peptide-shaker
Users that are interested in peptide-shaker are comparing it to the libraries listed below
Sorting:
- PDV: an integrative proteomics data viewer☆51Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆51Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆91Updated 3 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated last week
- ☆62Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆101Updated this week
- ☆55Updated 4 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- pathway and network analysis for metabolomics☆42Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆88Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated 2 weeks ago
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 2 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆44Updated 3 years ago
- Public Workflows at GNPS☆61Updated last year
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆53Updated 11 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆38Updated 3 weeks ago
- ☆13Updated last year
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆46Updated last year
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆21Updated 2 months ago