CompOmics / peptide-shaker
Interpretation of proteomics identification results
☆48Updated last month
Alternatives and similar repositories for peptide-shaker
Users that are interested in peptide-shaker are comparing it to the libraries listed below
Sorting:
- PDV: an integrative proteomics data viewer☆47Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆85Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- A Python interface to proteomics data repositories☆34Updated 2 months ago
- ☆13Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆45Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆49Updated this week
- ☆60Updated last year
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated 3 weeks ago
- Absolute quantification package based on quantms.io☆14Updated 3 months ago
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆116Updated last week
- Highly adaptable common interface for proteomics search and de novo engines☆43Updated last month
- DART-ID: retention time alignment and peptide identification confidence updates☆16Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆30Updated 2 months ago
- asari, metabolomics data preprocessing☆48Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated 2 weeks ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆44Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated 2 weeks ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆52Updated last month
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆96Updated last week
- Instrument Application Programming Interface☆46Updated 3 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- pathway and network analysis for metabolomics☆40Updated 11 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year