Interpretation of proteomics identification results
☆54May 8, 2026Updated 2 weeks ago
Alternatives and similar repositories for peptide-shaker
Users that are interested in peptide-shaker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly adaptable common interface for proteomics search and de novo engines☆47Aug 15, 2025Updated 9 months ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated 11 months ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Apr 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated last month
- Proteomics search & quantification so fast that it feels like magic☆289May 8, 2026Updated 2 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆76Apr 24, 2026Updated 3 weeks ago
- ☆13Mar 19, 2024Updated 2 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆141Apr 27, 2026Updated 3 weeks ago
- ☆15Oct 16, 2023Updated 2 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated last month
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Open source Java library for computational proteomics☆35Apr 12, 2026Updated last month
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31May 13, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆442Apr 30, 2026Updated 3 weeks ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Apr 27, 2026Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last month
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated 2 months ago
- ☆13Aug 20, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- A label free quantification tool.☆19Jan 13, 2026Updated 4 months ago
- Base Classes and Functions for Mass Spectrometry and Proteomics☆137May 4, 2026Updated 2 weeks ago
- Deep learning framework for proteomics☆152Apr 21, 2026Updated last month
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 5 years ago
- R package - MSstats☆97May 15, 2026Updated last week
- Morpheus mass spectrometry–based proteomics database search algorithm☆21Jul 25, 2024Updated last year
- TimsR: Easy access to timsTOF Pro data from R.☆12May 11, 2021Updated 5 years ago
- C# Mass Spectrometry Library☆40Jun 14, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆244Mar 7, 2026Updated 2 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110Updated this week
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 3 months ago
- MZmine 2 source code repository☆139May 5, 2024Updated 2 years ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆131Mar 23, 2026Updated 2 months ago