Nesvilab / IonQuantLinks
A label free quantification tool.
☆18Updated 4 months ago
Alternatives and similar repositories for IonQuant
Users that are interested in IonQuant are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆20Updated last week
- A Python interface to proteomics data repositories☆35Updated 5 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- MS/MS prediction for peptides☆24Updated 4 years ago
- ☆66Updated last year
- PDV: an integrative proteomics data viewer☆57Updated 4 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- ☆24Updated 2 years ago
- Python client for PRIDE Archive Rest API.☆26Updated 3 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 weeks ago
- A library for QC report based on MultiQC framework☆22Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last month
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆46Updated 6 months ago
- Absolute quantification package based on quantms.io☆16Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆22Updated 3 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Updated 3 years ago
- ☆13Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆30Updated 11 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated last month