Alternatives and similar repositories for PeCorA

Users that are interested in PeCorA are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 10 months ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 3 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆13Updated last month
• CompOmics / DeepLC
  DeepLC: Retention time prediction for peptides carrying any modification.
  ☆72Updated last month
• qzhang503 / proteoQ
  Processing and analysis of proteomics data
  ☆17Updated 2 months ago
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated last week
• MatteoLacki / timspy
  ☆22Updated 4 years ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 2 weeks ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆30Updated 2 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 6 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 2 weeks ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• semiller10 / postnovo
  Post-processing peptide de novo sequences to improve their accuracy
  ☆10Updated 3 years ago
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆32Updated 3 weeks ago
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆33Updated 4 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated last week
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆34Updated 2 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated 3 weeks ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated 3 months ago
• statisticalbiotechnology / quandenser
  QUANtification by Distillation for ENhanced Signals with Error Regulation
  ☆10Updated 3 years ago
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆62Updated 2 weeks ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• bittremieuxlab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated this week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆35Updated 8 months ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago
• vsegurar / DeepMSPeptide
  ☆18Updated 6 years ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆31Updated last year