Democratizing ML in proteomics
☆56Sep 15, 2026Updated last week
Alternatives and similar repositories for koina
Users that are interested in koina are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rescoring and spectral library generation pipeline for proteomics.☆59Aug 28, 2026Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 2 months ago
- ☆28Updated this week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆57Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Updated this week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆36Aug 22, 2026Updated last month
- Python framework for Deep Learning in Proteomics☆42Aug 18, 2026Updated last month
- A list of tools on proteomics using deep learning☆110May 14, 2026Updated 4 months ago
- Deep learning framework for proteomics☆158Aug 31, 2026Updated 3 weeks ago
- A library for QC report based on MultiQC framework☆34Sep 14, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- A cross-platform proteomics data analysis suite☆320Aug 7, 2026Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated 3 weeks ago
- ☆38Sep 11, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magic☆309Updated this week
- HUPO-PSI Standardized peptidoform notation☆26Aug 14, 2026Updated last month
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Updated this week
- Instrument Application Programming Interface☆57May 11, 2026Updated 4 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆160Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆201Aug 26, 2026Updated 3 weeks ago
- A deep learning toolkit for mass spectrometry☆96Aug 16, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- ☆17Jul 2, 2026Updated 2 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Sep 7, 2026Updated 2 weeks ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆26May 23, 2026Updated 3 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆478Sep 16, 2026Updated last week
- An open-source Python package to unify raw MS data accession and storage.☆35Aug 31, 2026Updated 3 weeks ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆42Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A label free quantification tool.☆20Jan 13, 2026Updated 8 months ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆20Sep 14, 2026Updated last week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆109Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 3 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆33Mar 27, 2026Updated 5 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆249Jul 8, 2026Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week