wilhelm-lab / koina
Democratizing ML in proteomics
☆36Updated 2 weeks ago
Alternatives and similar repositories for koina:
Users that are interested in koina are comparing it to the libraries listed below
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Instrument Application Programming Interface☆46Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- ☆26Updated last year
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- An open-source Python package to unify raw MS data accession and storage.☆24Updated 3 weeks ago
- Python framework for Deep Learning in Proteomics☆26Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated last week
- Python package for investigating the structural context of PTMs☆28Updated 3 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆13Updated 3 weeks ago
- GlyCombo, a combinatorial glycan composition assignment tool☆12Updated 2 months ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 5 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated this week
- ☆18Updated 2 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Updated last month
- ☆13Updated last year
- ☆13Updated 7 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆57Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆52Updated last month
- ☆37Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆54Updated 2 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 5 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆87Updated last month