horsepurve / DeepRTplusLinks
Deep (Transfer) Learning for Peptide Retention Time Prediction
☆51Updated 3 years ago
Alternatives and similar repositories for DeepRTplus
Users that are interested in DeepRTplus are comparing it to the libraries listed below
Sorting:
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆37Updated 5 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆29Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆69Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆65Updated 3 weeks ago
- ☆10Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 3 months ago
- ☆15Updated last year
- MS/MS prediction for peptides☆22Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated 2 weeks ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆87Updated last year
- ☆20Updated 4 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 3 months ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆15Updated 6 months ago
- Glycan Analysis and Glycoinformatics Library for Python☆35Updated last month
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆38Updated this week
- Dual-core Multi-agent Learning Framework For EC Number Prediction☆19Updated 7 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- ☆16Updated 3 years ago
- Python package for investigating the structural context of PTMs☆28Updated 5 months ago
- ☆24Updated 3 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆96Updated 2 years ago
- A software package for computing features of peptides and proteins☆60Updated last year