Collisional cross-section prediction for modified and multiconformational peptides
☆13Feb 18, 2026Updated last week
Alternatives and similar repositories for IM2Deep
Users that are interested in IM2Deep are comparing it to the libraries listed below
Sorting:
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated 2 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Jan 13, 2026Updated last month
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Feb 11, 2026Updated 2 weeks ago
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆15Oct 6, 2023Updated 2 years ago
- DLL and SO from Bruker.☆12Updated this week
- ☆12Jan 29, 2026Updated last month
- ☆16Feb 20, 2026Updated last week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 2 weeks ago
- Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification☆17Jun 19, 2023Updated 2 years ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆21Nov 15, 2016Updated 9 years ago
- ☆37Dec 15, 2025Updated 2 months ago
- An open-source Python package to unify raw MS data accession and storage.☆31Feb 6, 2026Updated 3 weeks ago
- ☆11Nov 30, 2024Updated last year
- ☆11Apr 10, 2022Updated 3 years ago
- ☆14Mar 6, 2022Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 3 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- ☆11Feb 5, 2024Updated 2 years ago
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 3 weeks ago
- NMR structure elucidation☆18Jun 16, 2025Updated 8 months ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- ☆12Jan 16, 2025Updated last year
- EasyPQP: Simple library generation for OpenSWATH☆11Feb 20, 2026Updated last week
- Prediction of glycopeptide fragment mass spectra by deep learning☆10Feb 20, 2024Updated 2 years ago
- ☆22Jun 28, 2021Updated 4 years ago
- This package is a python warpper for CFM-ID☆13Aug 26, 2022Updated 3 years ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated last month
- ☆13May 10, 2021Updated 4 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 2 years ago
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 8 months ago
- ☆12Jul 28, 2022Updated 3 years ago
- Predicting molecular structure from multimodal spectroscopic data☆19Jan 21, 2026Updated last month
- Source code of the paper "Prediction of Molecular Absorption Wavelength Using Deep Neural Networks"☆10May 29, 2022Updated 3 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year