Noble-Lab / casanovoLinks
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆163Updated this week
Alternatives and similar repositories for casanovo
Users that are interested in casanovo are comparing it to the libraries listed below
Sorting:
- A deep learning toolkit for mass spectrometry☆83Updated last year
- Deep learning framework for proteomics☆132Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- Democratizing ML in proteomics☆44Updated 2 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆101Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 4 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆50Updated this week
- ☆14Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆141Updated 2 weeks ago
- modular & open DIA search☆80Updated last week
- ☆20Updated 8 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated this week
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated 3 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Python package for efficient mass spectrometry data processing and visualization☆157Updated 7 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆90Updated 2 years ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆19Updated last year
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- RiboNucleic Acid (RNA) Language Model☆135Updated 3 weeks ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 4 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago