De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆179Mar 23, 2026Updated this week
Alternatives and similar repositories for casanovo
Users that are interested in casanovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated 2 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- ☆17Oct 1, 2024Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆63Mar 18, 2026Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Democratizing ML in proteomics☆52Mar 10, 2026Updated 2 weeks ago
- ☆15Oct 16, 2023Updated 2 years ago
- Deep learning framework for proteomics☆146Mar 18, 2026Updated last week
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆114Dec 15, 2025Updated 3 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Proteomics search & quantification so fast that it feels like magic☆278Mar 17, 2026Updated last week
- ☆43Feb 27, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated last month
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆30Oct 15, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Mar 17, 2026Updated last week
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 16, 2026Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Oct 30, 2024Updated last year
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Mar 19, 2026Updated last week
- A Proforma 2.1 Python package for amino acid sequence analysis & manipulation.☆15Mar 16, 2026Updated last week
- A cross-platform proteomics data analysis suite☆282Mar 17, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆151Mar 11, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- PepQuery: a targeted peptide search engine☆15May 1, 2024Updated last year
- Paper collection about de novo peptide Sequening☆23Feb 5, 2025Updated last year
- A library for deisotoping and charge state deconvolution of complex mass spectra☆41Jul 30, 2025Updated 7 months ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated 9 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Mar 12, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆431Feb 5, 2026Updated last month
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆108Mar 18, 2026Updated last week
- ☆22Mar 14, 2026Updated last week
- ☆12Jun 13, 2024Updated last year
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆30Mar 3, 2026Updated 3 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆58Oct 31, 2025Updated 4 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 4 months ago