Noble-Lab / casanovoLinks
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆171Updated this week
Alternatives and similar repositories for casanovo
Users that are interested in casanovo are comparing it to the libraries listed below
Sorting:
- A deep learning toolkit for mass spectrometry☆85Updated last month
- Deep learning framework for proteomics☆138Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- Democratizing ML in proteomics☆51Updated 2 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated last week
- ☆15Updated last year
- ☆20Updated 10 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆123Updated 5 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆106Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆146Updated 2 weeks ago
- Python package for efficient mass spectrometry data processing and visualization☆161Updated 2 weeks ago
- modular & open DIA search☆96Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆65Updated 6 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆78Updated 3 weeks ago
- Antibody Numbering and Antigen Receptor ClassIfication☆252Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated this week
- alphafold3 architecture step by step walkthrough.☆147Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆187Updated last year
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 6 months ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- ☆91Updated last year
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆31Updated 3 weeks ago