De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆178Mar 3, 2026Updated this week
Alternatives and similar repositories for casanovo
Users that are interested in casanovo are comparing it to the libraries listed below
Sorting:
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated last month
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Feb 11, 2026Updated 3 weeks ago
- ☆16Oct 1, 2024Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Feb 27, 2025Updated last year
- Democratizing ML in proteomics☆50Feb 2, 2026Updated last month
- Deep learning framework for proteomics☆145Feb 19, 2026Updated 2 weeks ago
- ☆15Oct 16, 2023Updated 2 years ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- ☆42Feb 27, 2026Updated last week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆114Dec 15, 2025Updated 2 months ago
- Proteomics search & quantification so fast that it feels like magic☆274Jan 6, 2026Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated 3 weeks ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Updated this week
- Confidence Estimation for Mass Spectrometry Proteomics☆13May 28, 2025Updated 9 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- Paper collection about de novo peptide Sequening☆23Feb 5, 2025Updated last year
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.☆14Feb 6, 2026Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Jan 13, 2026Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Oct 30, 2024Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated 2 weeks ago
- A cross-platform proteomics data analysis suite☆278Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Updated this week
- ☆20Feb 13, 2026Updated 3 weeks ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Python package for efficient mass spectrometry data processing and visualization☆164Dec 18, 2025Updated 2 months ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆427Feb 5, 2026Updated last month
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆28Jan 27, 2026Updated last month
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 8 months ago
- ☆12Jun 13, 2024Updated last year
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 3 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆107Updated this week