Noble-Lab / casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆122Updated this week
Alternatives and similar repositories for casanovo:
Users that are interested in casanovo are comparing it to the libraries listed below
- A deep learning toolkit for mass spectrometry☆70Updated 6 months ago
- Deep learning framework for proteomics☆116Updated this week
- A list of tools on proteomics using deep learning☆91Updated 9 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 weeks ago
- ☆13Updated 4 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 11 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆79Updated this week
- Democratizing ML in proteomics☆34Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 8 months ago
- modular & open DIA search☆60Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 3 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆13Updated 6 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆85Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆84Updated 2 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆44Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated last month
- Instrument Application Programming Interface☆45Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆124Updated 3 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- ☆17Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Python package for investigating the structural context of PTMs☆28Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 3 months ago
- GlyCombo, a combinatorial glycan composition assignment tool☆12Updated this week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆41Updated 2 years ago