Alternatives and similar repositories for casanovo

Users that are interested in casanovo are comparing it to the libraries listed below

• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆86Updated 2 weeks ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆141Updated 3 weeks ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆106Updated last year
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆51Updated last month
• CompOmics / DeepLC
  DeepLC: Retention time prediction for peptides carrying any modification.
  ☆72Updated 3 weeks ago
• gagneurlab / spectralis
  ☆15Updated last year
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆124Updated 2 weeks ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆109Updated 3 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆92Updated last month
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆91Updated last month
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated 2 months ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆147Updated this week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated 2 weeks ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆21Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆21Updated 10 months ago
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆92Updated 2 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆79Updated last month
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆84Updated last year
• MannLabs / alphapept
  A modular, python-based framework for mass spectrometry. Powered by nbdev.
  ☆184Updated last year
• MannLabs / alphadia
  modular & open DIA search
  ☆96Updated 2 weeks ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 2 weeks ago
• bittremieuxlab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆161Updated 2 weeks ago
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆21Updated last year
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆50Updated 2 weeks ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 2 weeks ago
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆26Updated 2 months ago
• Bruce-ywj / ERNIE-RNA
  Code of a structure-enhanced RNA language model named ERNIE-RNA
  ☆33Updated last month
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆15Updated 2 weeks ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 6 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆66Updated 6 years ago