De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
☆204Oct 15, 2026Updated this week
Alternatives and similar repositories for casanovo
Users that are interested in casanovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning toolkit for mass spectrometry☆96Updated this week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- ☆17Oct 1, 2024Updated 2 years ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆36Mar 3, 2026Updated 7 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Oct 9, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆135Jul 31, 2026Updated 2 months ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆37Aug 22, 2026Updated last month
- ☆23Oct 8, 2026Updated last week
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆32Oct 15, 2024Updated 2 years ago
- ☆15Oct 16, 2023Updated 2 years ago
- ☆47Feb 27, 2026Updated 7 months ago
- Deep learning framework for proteomics☆159Aug 31, 2026Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆24Oct 7, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Proteomics search & quantification so fast that it feels like magic☆312Oct 7, 2026Updated last week
- Democratizing ML in proteomics☆57Sep 15, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆31Jul 31, 2024Updated 2 years ago
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆85Oct 9, 2026Updated last week
- An open-source Python package to unify raw MS data accession and storage.☆35Aug 31, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 4 months ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆43Jul 30, 2025Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- Protein Identification with Deep Learning☆104Nov 27, 2020Updated 5 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆162Oct 6, 2026Updated last week
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆26Sep 24, 2026Updated 3 weeks ago
- A cross-platform proteomics data analysis suite☆325Aug 7, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Confidence Estimation for Mass Spectrometry Proteomics☆17Sep 17, 2026Updated 3 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆109Updated this week
- ☆48Jan 20, 2026Updated 8 months ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Nov 22, 2024Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 3 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 3 months ago